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Because she spends the episode swinging by her knees, we never get a full look at Buranko. In the picture book, she stands on her swing (and is also colored quite differently).
Hawk's Eye's car, suit, and fake beard are colored differently in the picture book adaptation of episode 138. (He's also driving a different model of car.)
In the picture book, Super Sailor Moon calls out "Moon Gorgeous Meditation!", but in the actual episode, the attack goes unnamed. Fun fact: Though the attack phrase is first spoken in episode 130, it wasn't settled on until they began scripting episode 133!
In the original scenario for episode 128, Pegasus powered up Moon's and Chibi Moon's scepters into their new items, but this was dropped and moved to episode 130.
Episode 125 ends with Super Sailor Moon materializing with a baby Hotaru in her arms, but originally, we were meant to see Sailor Moon finding Saturn within the dying remains of the Tau System and using the power of love to let Hotaru start over again as a child.
In episode 125, Mistress 9 originally attacked Sailor Moon and took the Holy Grail from her, but this was changed during storyboarding to Sailor Moon giving the Grail to Professor Tomoe, who then hands it over to Mistress 9. The picture book follows the original scenario.
In the episode, U-Ndoukai ties Sailor Moon's and Sailor Chibi Moon's ankles together, but in the picture book, she instead wraps Sailor Moon up in a giant mat, which is likely what was originally meant to happen.
U-Ndoukai has a different color scheme in the picture book version of episode 117, and Shun Hayase wears a different outfit. This suggests the illustrators were given U-Ndoukai's character design without any color references, but were left to design their own version of Shun.
Originally, Uranus and Neptune were to be attacked by terracotta angel statues in episode 110, but this was changed to lithographs in the actual show. The picture book follows the original concept.
In the episode, Doorknobder attacks Sailor Moon, but in the picture book, she attacks Haruka and Michiru. Given how faithful to the original scenario the picture book is, I'm willing to bet this was in there too.