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Sonic’s middle name is "Maurice". A fact revealed in the original mini-series before being mentioned again by Jules, making it officially canon.
Knuckles' transformation sequence into his super form is a direct shot-for-shot recreation of Mega Man Zero 2’s main antagonist, Elpis.
(#114: Return To Angel Island Part 4)
Ultra Sonic and Hyper Tails against the evil wizard, Ixis Naugus!
From issue #66.
Although the scrapped Sonic 1 badnik "Splats" wouldn’t appear in a official game until Mania, it didn’t stop Archie from including them in their stories. (#0 + #5)